Publikace v časopisech
12.
Kopecký Jr. V., Baumruk V.: Kam kráčí Ramanova optická aktivita aneb ohlédnutí za uplynulými 40 lety. Chemické listy, 2011, vol. 105, p. 162-169.
16.
Kubáňová M., Bednárová L., Maloň P., Baumruk V.: Raman Optical Activity of Amide and Disulfide Groups in Peptides and Model Systems. XXII INTERNATIONAL CONFERENCE ON RAMAN SPECTROSCOPY (AIP Conference Proceedings, 2010, vol. 1267, p. 841-842.
23.
Baumruk V., Kapitán J., Kopecký Jr. V., Bouř P., Maloň P.: Raman Optical Activity of Biomolecules: From Simple Models to Complex Systems. Perspectives in Vibrational Spectroscopy (AIP Conference Proceedings), 2008, vol. 1075, p. 23-27.
33.
Kopecký Jr. V., Ettrich R., Hofbauerová K., Baumruk V.: Vibrational spectroscopy and computer modeling of proteins: solving structure of alpha(1)-acid glycoprotein. Spectroscopy: An International Journal, 2004, vol. 18, p. 323-330.
53.
Abdelkafi M., Ghomi M., Turpin P.Y., Baumruk V., Hervé du Penhoat C., Lampire O., Bouchemal-Chibani N., Goyer P., Namane A., Gouyette C., Huynh-Dinh T., Bednárová L.: Common structural features of UUCG and UACG tetraloops in very short hairpins determined by UV absorption, Raman, IR and NMR spectroscopies. Journal of Biomolecular Structure & Dynamics, 1997, vol. 14, p. 579-593.
66.
Baumruk V., Huo D.F., Dukor R.K., Keiderling T.A., Leliévre D., Brack A.: Conformational Study of Sequential Lys and Leu Based Polymers and Oligomers using Vibrational and Electronic Circular Dichroism Spectra. Biopolymers, 1994, vol. 34, p. 1115-1121.
67.
Čermáková K., Šesták O., Matějka P., Baumruk V., Vlčková B.: Surface-Enhanced Raman Scattering (SERS) Spectroscopy with Borohydride-Reduced Silver Colloids: Controlling Adsorption of the Scattering Species by Surface Potential of Silver Colloid. Collection of Czechoslovak Chemical Communications, 1993, vol. 58, p. 2682-2694.
68.
Vlčková B., Matějka P., Šimonová J., Čermáková K., Pančoška P., Baumruk V.: Surface-Enhanced Resonance Raman Spectra of Free Base 5,10,15,20-Tetrakis(4-carboxyphenyl)porphyrin and its Silver Complex in Systems with Silver Colloid: Direct Adsorption in Comparison to Adsorption via Molecular Spacer. Journal of Physical Chemistry, 1993, vol. 97, p. 9719-9729.
69.
Baumruk V., Keiderling T.A.: Vibrational Circular Dichroism of Proteins in H2O Solution. Journal of the American Chemical Society, 1993, vol. 115, p. 6939-6942.
70.
Anzenbacher P., Mojzeš P., Baumruk V., Amler E.: Changes in Na+,K+-ATPase Structure Induced by Cation Binding: Approach by Raman Spectroscopy. FEBS Letters, 1992, vol. 312, p. 80-82.
71.
Vlčková B., Baumruk V., Mosinger J.: Resonance Raman Spectra of Bis(2, 4-pentanedithionate) Pd(II) Complex. Journal of Molecular Structure, 1992, vol. 265, p. 9-16.
72.
Florián J., Baumruk V.: Scaled Quantum Mechanical Force Fields and Vibrational Spectra of Solid State Nucleic Acid Constituents IV: N7-protonated Guanine. Journal of Physical Chemistry, 1992, vol. 96, p. 9283-9287.
73.
Matějka P., Vlčková B., Vohlídal J., Pančoška P., Baumruk V.: The Role of Triton X-100 as an Adsorbate and a Molecular Spacer on the Surface Silver Colloid: A Surface-Enhanced Raman Scattering Study. Journal of Physical Chemistry, 1992, vol. 96, p. 1361-1366.
74.
Vlčková B., Matějka P., Pančoška P., Baumruk V., Král V.: Surface-Enhanced Raman Spectra of 5,10,15,20-Tetrakis (4-carboxyphenyl)porphyrin/Silver Colloid System: What Information Do We Obtain?. Inorganic Chemistry, 1991, vol. 30, p. 4103-4105.
Konferenční příspěvky
1.
Kopecký Jr. V., Pazderka T., Hofbauerová K., Baumruk V.: 2D Correlation Analysis of Lysozyme Fibrillation Studied by Raman Optical Activity and Raman Spectroscopy. 6th International Congress on Microscopy & Spectroscopy, Oludeniz, Turkey, May 12–18, 2019, Editors: A. Yavuz Oral et al., 2019, p. 38 (Zvaná přednáška - Kopecký Jr. V.).
2.
Kopecký Jr. V., Hofbauerová K., Baumruk V.: Carbohydrate antennas of glycoproteins investigated by Raman spectroscopy and Raman optical activity. 26th International Conference on Raman Spectroscopy (ICORS 2018), Jeju, Korea, August 26–31, 2018, Editors: D. Kim & Y. M. Jung , 2018, p. 460-461 (Zvaná přednáška - Kopecký Jr. V.).
3.
Kopecký Jr. V., Mojzeš P., Hofbauerová K., Baumruk V.: 5'-GMP quartets and G-quadruplexes in human telomere investigated by Raman optical activity (ROA). 15th International Conference on Chiroptical Spectroscopy, Sapporo, Japan, August 30 – September 3, 2015, Editors: K. Monde, R. Kuroda, 2015, p. 139 (Poster - Kopecký Jr. V.).
4.
Kopecký Jr. V., Hofbauerová K., Baumruk V.: Carbohydrate part of glycoproteins studied by vibrational circular dichroism (VCD). 15th International Conference on Chiroptical Spectroscopy, Sapporo, Japan, August 30 – September 3, 2015, Editors: K. Monde, R. Kuroda , 2015, p. 127 (Poster - Hofbauerová K.).
5.
Kopecký Jr. V., Hofbauerová K., Baumruk V.: Carbohydrate antennas of glycoproteins investigated by Raman spectroscopy and Raman optical activity. 7th International Conference on Advanced Vibrational Spectroscopy, Kobe, Japan, August 25–30, 2013, Editors: Y. Ozaki , 2013, p. P238 (Poster - Kopecký Jr. V.).
6.
Profant V., Keiderling T.A., Bouř P., Baumruk V.: Detection of polyproline I conformation by ROA. The 15th European Conference on the Spectroscopy of Biological Molecules - ECSBM 15, United Kingdom, Oxford, October 25 - 30, 2013 (Přednáška - Profant V.).
7.
Profant V., Keiderling T.A., Bouř P., Baumruk V.: Detection of polyproline I conformation by ROA. The 14th International Conference on Chiroptical Spectroscopy - CD 2013, Nashville, USA, June 9 – 13, 2013 (Přednáška - Profant V.).
8.
Pazderková M., Profant V., Dlouhá H., Šebestík J., Bednárová L., Baumruk V., Maloň P.: Optical activity of the chiral bicyclic spirodilactam. The 14th International Conference on Chiroptical Spectroscopy - CD 2013, Nashville, USA, June 9 - 13, 2013 (Poster - Pazderková M.).
9.
Pazderka T., Hofbauerová K., Bednárová L., Baumruk V., Kopecký Jr. V.: Structure and dynamics of human haptoglobin phenotypes. 14th International Conference on Chiroptical Spectroscopy, Nashville, USA, June 9-13, 2013, Editors: P. L. Polavarapu, 2013, p. P46 (Poster - Pazderka T.).
10.
Pazderka T., Hofbauerová K., Baumruk V., Kopecký Jr. V.: Structure and dynamics of human haptoglobin phenotypes by menas of vibrational spectrscopy. 7th International Conference on Advanced Vibrational Spectroscopy, Kobe, Japan, August 25–30, 2013, Editors: Y. Ozaki , 2013, p. P167 (Poster - Pazderka T.).
11.
Hudecová J., Profant V., Novotná P., Baumruk V., Urbanová M., Bouř P.: The CH Stretching Region: Computational Modeling of Vibrational Optical Activity. Modeling Interactions in Biomolecules VI - MIB 2013, Mariánské lázně, Czech Republic, September 16 – 19, 2013 (Poster - Hudecová J.).
12.
Pazderka T., Hofbauerová K., Baumruk V., Kopecký Jr. V.: Comparison of structure of human haptoglobin phenotypes investigated by Raman spectroscopy and Raman optical activity. 23th International Conference on Raman Spectroscopy, Bangalore, India, August 12–17, 2012, Editors: S. Umapathy , 2012, p. 106 (Poster - Pazderka T.).
13.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: Different kinds of protein oligomerization investigated by Raman optical activity. Workshop CECAM 2012 – Vibrational Optical Activity: Interplay of Theory and Experiment, Pisa, Italy, September 23–27, 2012, Editors: C. Cappelli, K. Ruud, M. Pecul-Kudelska, R. Dukor, 2012, p. 53 (Poster - Pazderka T.).
14.
Baumruk V., Pazderková M., Profant V., Bednárová L., Maloň P.: Raman optical activity of amide and disulfide groups in peptides and model systems. International Conference on Vibrational Optical Activity-VOA3, Pisa, Italy, September 23 – 27, 2012 (Přednáška - Baumruk V.).
15.
Profant V., Johannessen C., Sattelle B., Blanch E.W., Bouř P., Baumruk V.: ROA Study of Chondroitin Sulphate and its Building Blocks. 23rd International Conference on Raman Spectroscopy, Bangalore, India, August 12 – 17, 2012 (Poster - Profant V.).
16.
Profant V., Zíma V., Johannessen C., Sattelle B., Blanch E.W., Bouř P., Baumruk V.: ROA Study of Chondroitin Sulphate and its Building Blocks. International Conference on Vibrational Optical Activity-VOA3, Pisa, Italy, September 23 – 27, 2012 (Přednáška - Profant V.).
17.
Profant V., Johannessen C., Blanch E.W., Bouř P., Baumruk V.: ROA Study of Chondroitin Sulphate and its Building Blocks. Xth Discussions in Structural Molecular Biology, Nove Hrady, Czech Republic, March 22 – 24, 2012 (Poster - Profant V.).
18.
Pazderková M., Profant V., Urbanová M., Bednárová L., Baumruk V., Maloň P.: Vibrational optical activity of rigid spirodilactams containing two non-planar amide groups. International Conference on Vibrational Optical Activity-VOA3, Pisa, Italy, September 23 – 27, 2012 (Poster - Pazderková M.).
19.
Hudecová J., Profant V., Urbanová M., Novotná P., Baumruk V., Bouř P.: Vibrational Optical Activity Spectra of Organic Compounds in the C-H Stretching Region. 23rd International Conference on Raman Spectroscopy, Bangalore, India, August 12 – 17, 2012 (Poster - Baumruk V.).
20.
Hudecová J., Profant V., Urbanová M., Novotná P., Baumruk V., Bouř P.: Vibrational Optical Activity Spectra of Organic Compounds in the C-H Stretching Region. Modeling and Design of Molecular Materials 2012, Wroclaw, Poland, September 10 – 14, 2012 (Poster - Hudecová J.).
21.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: 2D correlation analysis of lysozyme fibrillation studied by Raman optical activity and Raman spectroscopy. 13th International Conference on Chiroptical Spectroscopy – CD 2011, Oxford, United Kingdom, July 24–28, 2011, Editors: G. Siligardi, R. Hussain, L. Barron, G. Tranter , 2011, p. 34 (Přednáška - Kopecký Jr. V.).
22.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: 2D correlation analysis of lysozyme fibrillation studied by Raman optical activity and Raman spectroscopy. Sixth International Conference on Advanced Vibrational Spectroscopy (ICAVS-6), Sonoma County, California, 12-17 June, 2011 (Poster - Pazderka T.).
23.
Profant V., Bouř P., Baumruk V.: Conformational Study of Proline Oligomers: Experiment and Simulations. The 13th International Conference on Chiroptical Spectroscopy – CD2011, Oxford, UK, July 24 – 28, Editors: Siligardi G., Hussain R., Barron L., Tranter G., 2011, p. 49 (Přednáška - Profant V.).
24.
Profant V., Bouř P., Baumruk V.: Conformational Study of Proline Oligomers: Experiment and Simulations. 9th Discussions in Structural Molecular Biology, Nové Hrady, Czech Republic, March 24 – 26, Editors: Schneider B., 2011, p. 10 (Přednáška - Profant V.).
25.
Profant V., Bouř P., Baumruk V.: Folding Studies of Proline Oligomers by the Raman Optical Activity. The 14th European Congress on the Spectroscopy of Biological Molecules, Coimbra, Portugal, August 29 - September 3, Editors: Marques M.P., de Carvalho L.B., 2011, p. 1 (Poster - Profant V.).
26.
Kopecký Jr. V., Pazderka T., Hofbauerová K., Baumruk V.: Lysozyme fibrillation probed by 2D correlation analysis of Raman and Raman optical activity spectra. 1st Visegrad Symposium on Structural Systems Biology, Nové Hrady, Czech Republic, 29th November-2nd December 2011, Editors: R. Ettrich, B. Minofar, A. Zupčanová, D. Řeha, 2011, p. 18 (Zvaná přednáška - Kopecký Jr. V.).
27.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: Novel approach to protein structure determination by optical spectroscopies. 13th International Conference on Chiroptical Spectroscopy – CD 2011, Oxford, United Kingdom, July 24–28, 2011, Editors: G. Siligardi, R. Hussain, L. Barron, G. Tranter, 2011, p. 112.
28.
Pazderková M., Profant V., Maloň P., Baumruk V.: ROA measurement in the extended spectral region. The 13th International Conference on Chiroptical Spectroscopy – CD2011, Oxford, UK, July 24 – 28, Editors: Siligardi G., Hussain R., Barron L., Tranter G., 2011, p. 71 (Poster - Baumruk V.).
29.
Pazderková M., Profant V., Bednárová L., Urbanová M., Baumruk V., Maloň P.: VCD and ROA analysis of rigid chiral spirocyclic dilactams. The 13th International Conference on Chiroptical Spectroscopy – CD2011, Oxford, UK, July 24 – 28, Editors: Siligardi G., Hussain R., Barron L., Tranter G., 2011, p. 102 (Poster - Maloň P.).
30.
Pazderková M., Profant V., Šebestík J., Hodačová J., Urbanová M., Bednárová L., Baumruk V., Maloň P.: Vibrational Optical Activity of Two Nonplanar Amide Groups Interacting in Rigid Polycyclic Environment. The 13th International Conference on Chiroptical Spectroscopy - CD2011, Oxford, UK, 24-28 July, 2011, p. 65 (Přednáška - Pazderková M.).
31.
Profant V., Pazderková M., Bednárová L., Maloň P., Baumruk V.: VOA calculation of medium-sized rigid spirodilactams: Effect of basis set and computational methodology. The 13th International Conference on Chiroptical Spectroscopy – CD2011, Oxford, UK, July 24 – 28, Editors: Siligardi G., Hussain R., Barron L., Tranter G., 2011, p. 113 (Poster - Profant V.).
32.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: 2D correlation analysis of lysozyme fibrillation studied by Raman spectroscopy and Raman optical activity. 22nd International Symposium on Chirality (ISCD-22) – Program and Abstracts, Sapporo, Japan, July 12–15, Editors: E. Yashima, 2010, p. 242.
33.
Kopecký Jr. V., Hofbauerová K., Baumruk V.: Carbohydrate part of intact glycoproteins studied by Raman optical activity (ROA). 22nd International Symposium on Chirality (ISCD-22) – Program and Abstracts, Sapporo, Japan, July 12–15, Editors: E. Yashima, 2010, p. 241.
34.
Profant V., Bouř P., Baumruk V.: Dependence of polyproline ROA on the peptide length. 3th Annual meeting in Computational Chemistry, Norwegian Chemical Society – Book of Abstracts, Trondheim, Norway, November 22 – 23, Editors: Åstrand P.-O., 2010, p. 36 (Přednáška - Profant V.).
35.
Baumruk V., Bednárová L., Kubáňová M., Maloň P.: Disuphide chromofore and its optical activity. 22nd International Symposium on Chirality (ISCD-22) - Program and Abstracts, Sapporo, Japan, July 12–15, Editors: E. Yashima, 2010, p. 165 (Přednáška - Baumruk V.).
36.
Profant V., Bouř P., Baumruk V.: Formation of PPII helical conformation studied by Raman optical activity. 30th European Congress on Molecular Spectroscopy – Book of Abstracts, Florence, Italy, August 29 - September 3, Editors: Becucci M., Gellini C., Schettino V., 2010, p. 72 (Přednáška - Profant V.).
37.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: Raman and infrared spectroscopy of amino acids and its implication for improvement of the protein secondary structure determination. 30th European Congress on Molecular Spectroscopy – Book of Abstracts, Florence, Italy, 29 August – 3 September, Editors: M. Becucci, C. Gellini, V. Schettino, 2010, p. 132.
38.
Profant V., Šafařík M., Bouř P., Baumruk V.: Raman optical activity study of poly-L-proline chains of various lengths. Quantum Chemical Winter School: Response Properties of Molecular Materials, Chamonix Mont-Blanc, France, January 25 - 29, Editors: Ruud K., Norman P., Saue T., 2010, p. 10 (Poster - Profant V.).
39.
Profant V., Šafařík M., Bouř P., Baumruk V.: Raman optical activity study of poly-L-proline chains of various lengths. 8th Discussions in Structural Molecular Biology, Nove Hrady, Czech Republic, March 21 - 22, Editors: Schneider B., 2010, p. 10 (Poster - Profant V.).
40.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: Two-dimensional Raman and Raman optical activity correlation and factor analysis of lysozyme fibrillation. 30th European Congress on Molecular Spectroscopy – Book of Abstracts, Florence, Italy, 29 August – 3 September, Editors: M. Becucci, C. Gellini, V. Schettino, 2010, p. 84 (Přednáška - Kopecký Jr. V.).
41.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: Two-dimensional Raman and Raman optical activity correlation and factor analysis of lysozyme fibrillation. 8th Discussions in Structural Molecular Biology – Materials Structure vol. 17, Nové Hrady, Czech Republic, March 18–20, Editors: B. Schneider, I. Kutá-Smatanová, R. Kužel, D. Štys, R. Ettrich, J. Hašek, 2010, p. B47.
42.
Profant V., Šafařík M., Bouř P., Baumruk V.: Raman optical activity study of poly-L-proline chains of various lengths. 13th European Conference on the Spectroscopy of Biological Molecules – Book of Abstracts, Palermo, Italy, August 28 – September 2, Editors: Cupane A., 2009, p. 98 (Poster - Profant V.).
43.
Pazderka T., Kopecký Jr. V., Hofbauerová K., Baumruk V.: Two-dimensional Raman and raman optical activity correlation and factor analysis of lysozyme fibrillation. XIII European Conference on the Spectroscopy of Biological Molecules – Book of Abstracts, Palermo, Italy, August 28 – September 2, Editors: A. Cupane, 2009, p. PB102.
44.
Kapitán J., Kopecký Jr. V., Bok J., Praus P., Baumruk V.: Prague ROA spectrometer and new approaches to experimental data processing. 21st International Conference on Raman Spectroscopy – Book of Abstracts, ISBN 978-1-906715-00-7, London, Great Britain, August 17–22, Editors: R. Withnall, B. Z. Chowdhry, M Publications LLP, 2008, p. 566-567.
45.
Baumruk V., Kapitán J., Hrudíková J., Kopecký Jr. V., Maloň P., Bouř P.: Raman optical activity of biomolecules: from simple models to complex systems. 21st International Conference on Raman Spectroscopy – Book of Abstracts, ISBN 978-1-906715-00-7, London, Great Britain, August 17–22, Editors: R. Withnall, B. Z. Chowdhry, M Publications LLP, 2008, p. 561-562.
46.
Kopecký Jr. V., Pazderka T., Baumruk V.: Raman optical activity of carbohydrates and glycoproteins. Cukrblik 2007 – Current Chemistry and Biochemistry of Saccharides, Prague, Czech Republic, April 20, Editors: J. Moravcová, V. Křen, 2007 (Přednáška - Kopecký Jr. V.).