Publikace v časopisech

1.

Klener J., Štěpánek J.: Full UV resonance Raman analysis of temperature effects on the structural arrangement of DNA segments. Journal of Raman Spectroscopy, 2021, vol. 52, p. 678-689.

2.

Šubr M., Praus P., Kuzminova A., Kočišová E., Kylián O., Sureau F., Procházka M., Štěpánek J.: Magnetron-sputtered Polytetrafluoroethylenestabilized Silver Nanoisland Surface for Surface- Enhanced Fluorescence. Nanomaterials, 2020, vol. 10, p. 773 (13.

3.

Zoul D., Koplová M., Zimina M., Libera O., Rosnecký V., Košťál M., Šimon J., Schulc M., Vinš M., Cabalka M., Kučera J., Strunga V., Štěpánková H., Římal V., Čížek J., Štěpánek J., Procházka M.: Study of chemical processes in irradiated polycarbonate in the context of its applicability for integrating dosimetry of high doses. Radiation Physics and Chemistry, 2020, vol. 177, p. 109203 (13.

4.

Šubr M., Petr M., Kylián O., Štěpánek J., Veis M., Procházka M.: Anisotropic Optical Response of Silver Nanorod Arrays: Surface Enhanced Raman Scattering Polarization and Angular Dependences Confronted with Ellipsometric Parameters. Scientific Reports, 2017, vol. 7, p. 4293.

5.

Peksa V., Lebrušková P., Šípová H., Štěpánek J., Bok J., Homola J., Procházka M.: Testing gold nanostructures fabricated by hole-mask colloidal lithography as potential substrates for SERS sensors: sensitivity, signal variability, and the aspect of adsorbate deposition. Physical Chemistry Chemical Physics, 2016, vol. 18, p. 19613-19620.

6.

Pečínková (roz. Ottová) P., Bok J., Hofbauerová K., Štěpánek J.: Distinguishing co-existing unimolecular and bimolecular structural forms using joint analysis of Raman and UV absorption data. Journal of Raman Spectroscopy, 2015, vol. 46, p. 244-250.

7.

Štěpánek J., Kopecký Jr. V., Turpin P.Y., Li Z., Alpert B., Zentz C.: DNA electric charge oscillations govern protein–DNA recognition. PLoS One, 2015, vol. 10, p. 0124444 (11.

8.

Profantová (roz. Řezáčová) B., Coic Y.M., Profant V., Štěpánek J., Kopecký Jr. V., Turpin P.Y., Alpert B., Zentz C.: Organization of the MADS box from human SRF revealed by tyrosine perturbation. Journal of Physical Chemistry B , 2015, vol. 119, p. 1793-1801.

9.

Římal V., Socha O., Štěpánek J., Štěpánková H.: Spectroscopic Study of Cytosine Methylation Effect on Thermodynamics of DNA Duplex Containing CpG Motif. Journal of Spectroscopy, 2015, vol. 2015, p. 842810.

10.

Klener J., Štěpánek J.: UV resonance Raman study of PolyA and PolyU complexes: Mg2+-induced formation of PolyU·PolyA·PolyU triplexes. Vibrational Spectroscopy, 2015, vol. 81, p. 32-39.

11.

Šípová H., Špringer T., Rejman D., Šimák O., Petrová-Endová M., Novák P., Králíková Š., Páv O., Liboska R., Barvík Jr. I., Štěpánek J., Rosenberg I., Homola J.: 5'-O-Methylphosphonate nucleic acids - new modified DNAs that increase the E. coli RNase H cleavage rate of hybrid duplexes. Nucleic Acids Research, 2014, vol. 42, p. 5378-5389.

12.

Křišťan P., Chlan V., Štěpánková H., Řezníček R., Kouřil K., Štěpánek J., Poláková K., Procházka V., Čuda J., Medřík I.: Bentonite/Iron Oxide Composites: Preparation and Characterization by Hyperfine Methods. Journal of Nanomaterials, 2013, vol. 2013, p. 1-5.

13.

Profantová (roz. Řezáčová) B., Profant V., Zíma V., Kopecký Jr. V., Bednárová L., Zentz C., Baumruk V., Turpin P.Y., Štěpánek J.: Protonation effect of tyrosine in a segment of the SRF transcription factor: A combined optical spectroscopy, molecular dynamics, and density functional theory calculation study. Journal of Physical Chemistry B, 2013, vol. 117, p. 16086-16095.

14.

Němeček D., Štěpánek J., Thomas G.J.: Raman Spectroscopy of Proteins and Nucleoproteins. Current Protocols in Protein Science, 2013, vol. 71, p. 1-52.

15.

Řezáčová B., Coic Y.M., Zentz C., Turpin P.Y., Štěpánek J.: Spectroscopic Determination of pKa Constants of MADS Box Segments. Spectroscopy: An International Journal, 2012, vol. 27, p. 455-461.

16.

Kříž M., Snášel J., Kopecký Jr. V., Páv O., Rosenberg I., Štěpánek J.: Structural changes of human RNase L upon homodimerization investigated by Raman spectroscopy. Biochimica et Biophysica Acta – Proteins and Proteomics, 2012, vol. 1824, p. 1039-1044.

17.

Praus P., Kočišová E., Mojzeš P., Štěpánek J., Sureau F.: Study of Cellular Uptake of Modified Oligonucleotides by Using Time-Resolved Microspectrofluorimetry and Florescence Imaging . Spectroscopy - an International Journal, 2012, vol. 27, p. 415-419.

18.

Praus P., Kočišová E., Mojzeš P., Štěpánek J., Turpin P.Y., Sureau F.: Cellular uptake of modified oligonucleotides enhanced by porphyrins studied 3 by time-resolved microspectrofluorimetry and fluorescence imaging techniques. Journal of Molecular Structure, 2011, vol. XXX, p. X1.

19.

Ottová P., Espinoza Herrera S.J., Štěpánek J.: Magnesium effect on premelting transitions in nucleic acids: DNA duplex and RNA hairpin models . Journal of Molecular Structure, 2011, vol. 993, p. 324-327.

20.

Šípová H., Vaisocherová H., Štěpánek J., Homola J.: A dual surface plasmon resonance assay for the determination of ribonuclease H activity. Biosensors and bioelectronics, 2010, vol. 26, p. 1605-1611.

21.

Praus P., Kočišová E., Mojzeš P., Štěpánek J., Turpin P.Y., Sureau F.: Frequency domain fluorescence microspectrometry: Application to cellular uptake and drug distribution. SPECTROSCOPY-AN INTERNATIONAL JOURNAL, 2010, vol. 24, p. 303-307.

22.

Kočišová E., Procházka M., Štěpánek J., Mojzeš P.: Interaction of porphyrin/ oligonucleotide complex with liposomes studied by drop coating deposition Raman spectroscopy. SPECTROSCOPY-AN INTERNATIONAL JOURNAL, 2010, vol. 24, p. 197-200.

23.

Štěpánková H., Kouřil K., Chlan V., Gömert R., Müller R., Štěpánek J.: Internal magnetic fields in submicron particles of barium hexaferrite detected by 57Fe NMR. Journal of Magnetism and Magnetic Materials, 2010, vol. 322, p. 1323-1326.

24.

Chlan V., Kouřil K., Štěpánková H., Řezníček R., Štěpánek J., Betušiak M., Krol G., Tamawski Z., Kakol Z., Kozlowski A.: Magnetically induced structural reorientation in magnetite studied by nuclear magnetic resonance. Journal of Applied Physics, 2010, vol. 108, p. 083914.

25.

Espinoza Herrera S.J., Štěpánek J.: Raman study of magnesium induced conversion of polyU·polyA duplexes to polyU·polyA·polyU triplexes. Spectroscopy: An International Journal, 2010, vol. 24, p. 445-448.

26.

Špringer T., Šípová H., Vaisocherová H., Štěpánek J., Homola J.: Shielding effect of monovalent and divalent cations on solid-phase DNA hybridization: surface plasmon resonance biosensor study. Nucleic Acids Research, 2010, vol. 38, p. 7343-7351.

27.

Štěpánek J., Kopecký Jr. V., Mezzetti A., Turpin P.Y., Paulin D., Alpert B., Zentz C.: Structural and dynamic changes of the serum response element and the core domain of serum response factor induced by their association. Biochemical and Biophysical Research Communications, 2010, vol. 391, p. 203-208.

28.

Vaisocherová H., Snášel J., Špringer T., Šípová H., Rosenberg I., Štěpánek J., Homola J.: Surface plasmon resonance study on HIV-1 integrase strand transfer activity. Analytical and Bioanalytical Chemistry, 2009, vol. 393, p. 1165-1172.

29.

Ledinský M., Vetushka A., Stuchlík J., Mates T., Fejfar A., Kočka J., Štěpánek J.: Crystallinity of the mixed phase silicon thin films by Raman spectroscopy. Journal of Non-Crystalline Solids, 2008, vol. 354, p. 2253-2257.

30.

Vachoušek J., Štěpánek J.: Raman study of HIV TAR structural stability. Spectroscopy: An International Journal, 2008, vol. 22, p. 267-277.

31.

Hajduková N., Procházka M., Molnár P., Štěpánek J.: SERRS of free-base porphyrins on immobilized metal gold and silver nanoparticles. Vibrational Spectroscopy, 2008, vol. 48, p. 142-147.

32.

Šloufová I., Šišková K., Vlčková B., Štěpánek J.: SERS-activating effect of chlorides on borate-stabilized silver nanoparticles: formation of new reduced adsorption sites and induced nanoparticle fusion. Physical Chemistry Chemical Physics, 2008, vol. 10, p. 2233-2242.

33.

Kříž M., Němeček D., Turpin P.Y., Rosenberg I., Štěpánek J.: Structural effects of internucleotide linkage modification at mismatch site in DNA/RNA duplex: Raman study. Vibrational Spectroscopy, 2008, vol. 48, p. 148-152.

34.

Praus P., Kočišová E., Mojzeš P., Štěpánek J., Seksek O., Sureau F., Turpin P.Y.: Time-resolved microspectrofluorometry and fluorescence imaging techniques - Study of porphyrin-mediated cellular uptake of oligonucleotides. Annals of the New York Academy Sciences, 2008, vol. 1130, p. 117-121.

35.

Praus P., Kočišová E., Seksek O., Sureau F., Štěpánek J., Turpin P.Y.: Advanced microfluores cence methods in monitoring intracellular uptake of "antisense" oligonucleotides. Current Organic Chemistry, 2007, vol. 11, p. 515-527.

36.

Štěpánek J., Vincent M., Turpin P.Y., Paulin D., Fermandjian S., Alpert B., Zentz C.: C -> G base mutations in the CArG box of c-fos serum response element alter its bending flexibility. FEBS Journal, 2007, vol. 274, p. 2333-2348.

37.

Hajduková N., Procházka M., Štěpánek J., Špírková M.: Chemically reduced and laser-ablated gold nanoparticles immobilized to silanized glass plates: Preparation, characterization and SERS spectral testing. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 2007, vol. 301, p. 264-270.

38.

Kočišová E., Praus P., Mojzeš P., Sureau F., Štěpánek J., Seksek O., Turpin P.Y.: Cellular uptake of phosphorothioate oligonucleotide facilitated by cationic porphyrin: A microfluorescence study. Biopolymers, 2006, vol. 82, p. 325-328.

39.

Procházka V., Štěpánková H., Štěpánek J., Snezhko A., Chlan V., Kouřil K.: Exchange interactions in barium hexaferrite. Acta Physica Slovaca, 2006, vol. 56, p. 165-168.

40.

Vaisocherová H., Zítová A., Lachmanová M., Štěpánek J., Králíková Š., Liboska R., Rejman D., Rosenberg I., Homola J.: Investigating oligonucleotide hybridization at subnanomolar level by surface plasmon resonance biosensor method. Biopolymers, 2006, vol. 82, p. 394-398.

41.

Štěpánková H., Englich J., Štěpánek J., Kohout J., Pfeffer M., Černá J., Chlan V., Procházka V., Bunyatova E.: Nuclear spin-lattice relaxations in ethanol with dissolved TEMPO radicals. Acta Physica Slovaca, 2006, vol. 56, p. 141-144.

42.

Němeček D., Kočišová E., Praus P., Štěpánek J.: Studium oligonukleotidů pokročilými technikami optické spektroskopie. Československý časopis pro fyziku, 2006, vol. 56, p. 319-326.

43.

Procházka M., Hajduková N., Štěpánek J.: Surface-enhanced resonance Raman scattering of porphyrins on gold nanoparticles attached to silanized glass plates. Biopolymers, 2006, vol. 82, p. 390-393.

44.

Kočišová E., Praus P., Rosenberg I., Seksek O., Sureau F., Štěpánek J., Turpin P.Y.: Cellular uptake of modified oligonucleotides: fluorescence approach. Journal of Molecular Structure, 2005, vol. 744-747, p. 151-153.

45.

Procházka M., Vlčková B., Štěpánek J., Turpin P.Y.: Probing of Porphyrin Surface Chemistry in Systems with Laser-Ablated Ag Nanoparticle Hydrosol: Role of Thiosulfate Anions. Langmuir, 2005, vol. 21, p. 2956-2962.

46.

Němeček D., Vaisocherová H., Štěpánek J., Turpin P.Y.: Structural features of a central mismatch in oligonucleotide hybrid duplexes visualized via Raman spectroscopy: Model system for evaluation of potential “antisense” drugs. Biopolymers, 2005, vol. 79, p. 1-8.

47.

Procházka M., Štěpánek J., Turpin P.Y.: Interaction of phospholipid dispersions with water-soluble porphyrins as monitored by their Raman temperature profiles. Chemistry and Physics of Lipids, 2004, vol. 132, p. 145-156.

48.

Kočišová E., Praus P., Rosenberg I., Seksek O., Sureau F., Štěpánek J., Turpin P.Y.: Intracellular uptake of modified oligonucleotide studied by two fluorescence techniques. Biopolymers, 2004, vol. 74, p. 110-114.

49.

Němeček D., Štěpánek J., Turpin P.Y., Rosenberg I.: Raman study of potential “antisense” drugs: Nonamer oligonucleotide duplexes with a central mismatch as a model system for the binding selectivity evaluation. Biopolymers, 2004, vol. 74, p. 115-119.

50.

Hanuš J., Němeček D., Štěpánek J., Turpin P.Y., Králíková Š., Bok J., Rosenberg I.: Structural compatibility of novel nucleotide modifications with shortened linkages designed for antigene/antisense therapy. Journal of Raman Spectroscopy, 2004, vol. 35, p. 418-425.

51.

Praus P., Sureau F., Kočišová E., Rosenberg I., Štěpánek J., Turpin P.Y.: A frequency domain phase/modulation technique for intracellular multicomponent fluorescence analysis: Technical approach and pharmacological applications. Spectroscopy: An International Journal, 2003, vol. 17, p. 429-434.

52.

Procházka M., Štěpánek J., Bok J.: Ag+ and Ag(0) coordination of porphyrins adsorbed on laser-ablated Ag colloids monitored by surface-enhanced resonance Raman scattering spectroscopy. Main Group Metal Chemistry, 2003, vol. 26, p. 317-321.

53.

Kočišová E., Sureau F., Praus P., Rosenberg I., Štěpánek J., Turpin P.Y.: Monitoring of labeled antisense oligonucleotides within living cells by using a multifrequency phase/modulation approach for fluorescence lifetime measurements . Journal of Molecular Structure, 2003, vol. 651-653, p. 115-122.

54.

Procházka M., Štěpánek J., Turpin P.Y., Bok J.: Drastically Different Porphyrin Adsorption and Metalation Processes in Chemically Prepared and Laser-Ablated SERS-Active Silver Colloidal Substrates. The Journal of Physical Chemistry B, 2002, vol. 106, p. 1543-1549.

55.

Pelant I., Fojtík P., Luterová K., Kočka J., Poruba A., Štěpánek J.: Electric-field-enhanced metal-induced crystallization of hydrogenated amorphous silicon at room temperature. Applied Physics A: Materials Science & Processing, 2002, vol. 74, p. 557-560.

56.

Barvík Jr. I., Štěpánek J., Bok J.: Explicit Solvent Molecular Dynamics Simulation of Duplex Formed by the Modified Oligonucleotide with Alternating Phosphate/Phosphonate Internucleoside Linkages and its Natural Counterpart. Journal of Biomolecular Structure & Dynamics, 2002, vol. 19, p. 863-876.

57.

Barvík Jr. I., Štěpánek J., Bok J.: Fully solvated molecular dynamics simulations of duplexes formed by modified oligonucleotides with xylo/phosphodiesteric and xylo/phosphonate internucleoside linkages and their natural counterpart. Computer Physics Communications, 2002, vol. 147, p. 158-161.

58.

Procházka M., Turpin P.Y., Štěpánek J., Vlčková B.: SERRS of free base porphyrin in laser-ablated colloids: evidence for three different spectral porphyrin forms. Journal of Raman Spectroscopy, 2002, vol. 33, p. 758-760.

59.

Praus P., Gášková D., Kočišová E., Chaloupka R., Štěpánek J., Bok J., Rejman D., Rosenberg I., Turpin P.Y., Sureau F.: Spectral decomposition of intracellular complex fluorescence using multiple-wavelength phase modulation lifetime determination: Technical approach and preliminary applications. Biopolymers, 2002, vol. 67, p. 339-343.

60.

Praus P., Procházka M., Štěpánek J., Bok J.: Influence of Ag colloid aggregation on porphyrin SERRS spectra monitored via Raman correlation spectroscopy. Journal of Molecular Structure, 2001, vol. 565-566, p. 129-132.

61.

Chmelová K., Štěpánek J., Hanuš J., Turpin P.Y.: Raman study of the triplex-like complex formation of polyuridic acid and diadenosine monophosphate: influence of nickel ions. Journal of Molecular Structure, 2001, vol. 565-566, p. 231-235.

62.

Pelant I., Fojtík P., Luterová K., Kočka J., Knížek K., Štěpánek J.: Room temperature electric field induced crystallization of wide band gap hydrogenated amorphous silicon. Thin Solid Films, 2001, vol. 383, p. 101-103.

63.

Hanuš J., Barvík Jr. I., Ruszová-Chmelová K., Štěpánek J., Turpin P.Y., Rosenberg I., Petrová-Endová M.: –CH2– lengthening of the internucleotide linkage in the ApA dimer can improve its conformational compatibility with its natural polynucleotide counterpart. Nucleic Acids Research, 2001, vol. 29, p. 5182-5194.

64.

Luterová K., Fojtík P., Poruba A., Dian J., Valenta J., Stuchlíková H., Štěpánek J., Kočka J., Pelant I.: Light emitting wide band gap a-Si:H deposited by microwave electron cyclotron resonance plasma-enhanced chemical vapour deposition . Journal of Non-Crystalline Solids, 2000, vol. 266-269, p. 583-587.

65.

Kudrna J., Malý P., Trojánek F., Štěpánek J., Lechner T., Pelant I., Meier J., Kroll U.: Ultrafast Carrier Dynamics in Undoped Microcrystalline Silicon. Materials Science and Engineering B, 2000, vol. 69-70, p. 238-242.

66.

Luterová K., Pelant I., Fojtík P., Nikl M., Gregora I., Kočka J., Dian J., Valenta J., Malý P., Kudrna J., Štěpánek J., Poruba A., Horváth P.: Visible photoluminescence and electroluminescence in wide-bandgap hydrogenated amorphous silicon. Philosophical Magazine Part B, 2000, vol. 80, p. 1811-1832.

67.

Lang J., Chmelová K., Štěpánek J., Kowalewski J., Holý A.: Applicability of Spectroscopic Methods in Investigation of Transition Metal Cation Binding to Adenine Mononucleotides and Their Analogues. Journal of Molecular Structures, 1999, vol. 480-481, p. 363-367.

68.

Procházka M., Štěpánek J., Turpin P.Y., Bok J.: Concentration Dependent Behavior of the Free Base Porphyrins in Ag Colloid/Porphyrin SERS-Active System Studied via the Metalation Kinetics. Vibrational Spectroscopy, 1999, vol. 19, p. 233-237.

69.

Hanuš J., Štěpánek J., Turpin P.Y., Bok J.: Formation and Stability of nucleotide complexes: Raman titration investigation. Journal of Molecular Structure, 1999, vol. 480-481, p. 437-442.

70.

Srnová I., Vlčková B., Němec I., Šlouf M., Štěpánek J.: Infrared microscopy and surface-enhanced Raman scattering of Ag colloid-2,2'-bipyridine film. Journal of Molecular Structure, 1999, vol. 482-483, p. 213-216.

71.

Procházka M., Turpin P.Y., Štěpánek J., Bok J.: Metallation kinetics of a free base porphyrin in surface-enhanced resonance Raman scattering active Ag colloid system as a probe of porphyrin–nucleic acids interaction. Journal of Molecular Structure, 1999, vol. 482-483, p. 221-224.

72.

Chmelová K., Štěpánek J., Zachová J.: Polarized raman study of the low symmetry molecular crystals. 9–methyladenine: 1–methylthymine complex. Vibrational Spectroscopy, 1999, vol. 19/2, p. 255-259.

73.

Hanuš J., Chmelová K., Štěpánek J., Turpin P.Y., Bok J., Rosenberg I., Točík Z.: Raman spectroscopic study of triplex-like complexes of polyuridylic acid with the isopolar, non-isosteric phosphonate analogues of diadenosine monophosphate. Journal of Raman Spectroscopy, 1999, vol. 30, p. 667-676.

74.

Hanzlíková J., Procházka M., Štěpánek J., Bok J., Baumruk V., Anzenbacher P.: Metalation of 5,10,15,20-tetrakis(1-methyl-4-pyridyl)porphyrin in Silver Colloids Studied via Time Dependence of Surface-Enhanced Resonance Raman Spectra. Journal of Raman Spectroscopy, 1998, vol. 29, p. 575-584.

75.

Barvík Jr. I., Štěpánek J., Bok J.: Molecular dynamics simulations of the oligonucleotide with the modified phosphate/phosphonate internucleotide linkage. Czechoslovak Journal of Physics, 1998, vol. 48, p. 409-415.

76.

Štěpánek J., Kowalewski J., Lang J., Mojzeš P.: Spectroscopic investigation of nickel cation binding with adenine mononucleotides: stability and structure of the 1 : 2 complex with adenosine 5 '-monophosphate. Journal of Biological Inorganic Chemistry, 1998, vol. 3, p. 543-556.

77.

Srnová I., Procházka M., Vlčková B., Štěpánek J., Malý P.: Surface-Enhanced Raman Scattering-Active Systems Prepared from Ag Colloids Laser-Ablated in Chemically Modified Aqueous Media. Langmuir, 1998, vol. 14, p. 4666-4670.

78.

Procházka M., Štěpánek J., Vlčková B., Srnová I., Malý P.: Laser ablation: Preparation of “chemically pure” Ag colloids for surface-enhanced Raman scattering spectroscopy. Journal of Molecular Structure, 1997, vol. 410-411, p. 213-216.

79.

Procházka M., Hanzlíková J., Štěpánek J., Baumruk V.: Metalation of positively charged water soluble mesoporphyrins studied via time-resolved SERRS spectroscopy. Journal of Molecular Structure, 1997, vol. 410-411, p. 77-79.

80.

Aamouche A., Ghomi M., Grajcar L., Baron M.H., Romain F., Baumruk V., Štěpánek J., Coulombeau C., Jobic H., Berthier G.: Neutron Inelastic Scattering, Optical Spectroscopies and Scaled Quantum Mechanical Force Fields for Analyzing the Vibrational Dynamics of Pyrimidine Nucleic Acid Bases: 3. Cytosine. The Journal of Physical Chemistry, 1997, vol. 101, p. 10063-10074.

81.

Zachová J., Chmelová K., Kuželová K., Štěpánek J.: Pěstování monokrystalů komplexu 1–methylthyminu a 9–methyladeninu a studium jeho vibračních módů (Single crystal growth and vibrational study of 1–methylthymine and 9–methyladenine complex). Chem. listy, 1997, vol. 91, p. 680-681.

82.

Procházka M., Mojzeš P., Štěpánek J., Vlčková B., Turpin P.Y.: Probing Applications of Laser-Ablated Ag Colloids in SERS Spectroscopy: Improvement of Ablation Procedure and SERS Spectral Testing. Analytical Chemistry, 1997, vol. 69, p. 5103-5108.

83.

Štrajbl M., Baumruk V., Florián J., Bednárová L., Rosenberg I., Štěpánek J.: Vibrational spectra and quantum mechanical force fields of modified oligonucleotide linkages: 1. methyl methoxymethanphosphonate. Journal of Molecular Structure, 1997, vol. 415, p. 161-177.

84.

Florián J., Baumruk V., Štrajbl M., Bednárová L., Štěpánek J.: IR and Raman Spectra, Conformational Flexibility, and Scaled Quantum Mechanical Force Fields of Sodium Dimethyl Phosphate and Dimethyl Phosphate Anion. The Journal of Physical Chemistry, 1996, vol. 100, p. 1559-1568.

85.

Zachová J., Císařová I., Mojzeš P., Štěpánek J.: Single Crystal of the Nickel(II) Complex with Adenosine 5´-Monophosphate: A Model for Interaction Study of Nickel and Nucleic Acid Components in Solid State and in Aqueous Solution. Journal of Inorganic Biochemistry, 1995, vol. 59, p. 177.

86.

Praus P., Štěpánek J., Mojzeš P., Bok J.: Statistical Signal Processing in Multichannel Raman Spectroscopy. Journal of Molecular Structure, 1995, vol. 348, p. 285-288.

87.

Mojzeš P., Štěpánek J., Rosenberg I., Točík Z., Burian M., Pavelčíková M., Réfrégiers M., Videlot H.: Structural and Conformational Properties of Diribonucleoside Monophosphate Analogs Studied by Raman Spectroscopy. Journal of Molecular Structure, 1995, vol. 348, p. 45-48.

Konferenční příspěvky

1.

Hofbauerová K., Kopecký Jr. V., Kočišová E., Procházka M., Štěpánek J.: General Applicability of Drop-Coating Deposition Raman Spectroscopy. 5th International Congress on Microscopy & Spectroscopy, Oludeniz, Turkey, April 24–30, 2018, Editors: A. Yavuz Oral et al., 2018, p. 85 (Poster - Hofbauerová K.).

2.

Klener J., Štěpánek J.: UV Resonance Raman Study of Mg2+-induced formation of polyU·polyA·polyU triplexes. XXIV. International Conference on Raman Spectroscopy, Jena, Germany, August 10–15, Editors: Pop J., Deckert V., 2014, p. 979-980 (Poster - Klener J.).

3.

Kopecký Jr. V., Hofbauerová K., Kohoutová J., Kříž M., Klener J., Ettrich R., Štěpánek J.: Application of drop coating deposition Raman spectrscopy in protein structural studies. 7th International Conference on Advanced Vibrational Spectroscopy, Kobe, Japan, August 25–30, 2013, Editors: Y. Ozaki , 2013, p. P169 (Poster - Hofbauerová K.).

4.

Profantová (roz. Řezáčová) B., Zentz C., Kopecký Jr. V., Turpin P.Y., Štěpánek J.: Spectroscopic study of MADS-box segments and their interaction woth DNA. 15th European Conference on the Spectroscopy of Biological Molecules, Oxford, United Kingdom, August 25–30, 2013, Editors: T. Parker, 2013, p. 133 (Poster - Profantová (roz. Řezáčová) B.).

5.

Klener J., Štěpánek J.: UV Resonance Raman of Adenine Containing NA Constituents: Effect of Molecular Composition and Environmental Conditions. 7th International Conference on Advanced Vibrational Spectroscopy, Kobe, Japan, August 25–30, 2013, Editors: Y. Ozaki, 2013, p. P147 (Poster - Klener J.).

6.

Profantová (roz. Řezáčová) B., Profant V., Zíma V., Zentz C., Kruglik S.G., Bednárová L., Turpin P.Y., Štěpánek J.: Raman spectroscopy of a MADS box segment: experiments and calculations. 23rd International Conference on Raman Spectroscopy, Bangalore, India, August 12 – 17, 2012 (Poster - Profantová (roz. Řezáčová) B.).

7.

Řezáčová B., Coic Y.M., Zentz C., Turpin P.Y., Kruglik S.G., Profant V., Štěpánek J.: Spectroscopic study of the MADS box. Xth Discussions in Structural Molecular Biology, Nove Hrady, Czech Republic, March 22 – 24, 2012 (Poster - Řezáčová B.).

8.

Řezáčová B., Zentz C., Turpin P.Y., Štěpánek J.: Investigation of MADS box intrinsic fluorophores. 12th Conference on Methods and Applications of Fluorescence Spectroscopy, Imaging and Probes, Strasbourg, France, 11-14 September, 2011, p. 261 (Poster - Řezáčová B.).

9.

Kopecký Jr. V., Hofbauerová K., Kohoutová J., Štěpánek J., Ettrich R.: Can drop coating deposition Raman spectroscopy distinguish shortcomings or inaccuracies in protein crystals?. 30th European Congress on Molecular Spectroscopy – Book of Abstracts, Florence, Italy, 29 August – 3 September, Editors: M. Becucci, C. Gellini, V. Schettino, 2010, p. 289 (Přednáška - Hofbauerová K.).

10.

Praus P., Kočišová E., Mojzeš P., Štěpánek J., Sureau F., Turpin P.Y.: Cellular uptake of modified oligonucleotides enhanced by zinc porphyrins studied by time-resolved microspectrofluorimetry and fluorescence imaging techniques. 30th European Congress on Molecular Spectroscopy - Book of Abstracts, Frorence, Italy, 29 August - 3 September 2010, Editors: M. Becucci, C. Gellini, V. Schettino, 2010, p. 105.

11.

Řezáčová B., Zentz C., Turpin P.Y., Štěpánek J.: Spectroscopic study of MADS box and its interaction with DNA. 30th European Congress on Molecular Spectroscopy, Florence, Italy, 29 August – 3 September, Editors: M. Becucci, C. Gellini, V. Schettino, 2010, p. 288 (Přednáška - Řezáčová B.).

12.

Espinoza Herrera S.J., Barvík Jr. I., Štěpánek J.: Spectroscopic Study of Magnesium Effect on Stability of RNA and DNA Triple Strand Polynucleotide. XXII International Conference on Raman Spectroscopy, AIP Conference Proceedings, vol. 1267, 2010, p. 613-614.

13.

Štěpánek J., Ottová P., Řezáčová B., Vachoušek J.: Raman monitoring of temperature induced structural changes in six.-member loop of HIV-1 TAR hairpin and its R06 aptamer. 5th International Conference on Advanced Vibrational Spectroscopy, Melbourne, 12-17 July, 2009, p. 65 (Přednáška - Štěpánek J.).

14.

Kopecký Jr. V., Hofbauerová K., Kohoutová J., Štěpánek J., Ettrich R.: Structure differences between protein crystals and solution structures monitored by Raman spectrscopy. XIII European Conference on the Spectroscopy of Biological Molecules – Book of Abstracts, Palermo, Italy, August 28 – September 2, Editors: A. Cupane, 2009, p. PB102.

15.

Ruszová-Chmelová K., Štěpánek J., Zachová J., Rosenberg I., Turpin P.Y.: Model of modidied internucleotide linkage for antisense use> Raman study of C-PCC(2'-5') nucleotide single crystal. 1st Meeting of the Czech and Slovak Structural Biologists Materials Structure, 2002, p. 47-48.

16.

Ruszová-Chmelová K., Štěpánek J., Zachová J., Rosenberg I., Turpin P.Y.: Model of Modified Internucleotide Linkage for Antisense Use: Study of G-pCC(2'-5') Nucleotide Single Crystal. 9th European Conference on the Spectroscopy of Biological Molecules, Charles University, Prague, Editors: Kopecký V. Jr., Ruszová K., Štěpánek J., 2001, p. 205.

17.

Barvík Jr. I., Štěpánek J., Bok J.: Fully Solvated Molecular Dynamics Simulations of a Duplex Formed by a Modified Oligonucleotide with the Isosteric Phosphonate Internucleoside Linkages and Its Natural Counterpart. Journal of Molecular Graphics and Modelling, 2000, p. 194.

18.

Barvík Jr. I., Štěpánek J., Bok J.: Molecular dynamics simulations of the oligonucleotide with the modified phosphate/phosphonate internucleotide linkage. Computer Physics Communications, 1999, p. 122.

19.

Štěpánek J., Hanuš J., Chmelová K., Turpin P.Y., Barvík Jr. I.: Optical spectroscopy study of nucleic acid interactions with newly synthesized complementary short-chain nucleic acids. Spectroscopy of Biological Molecules: New Directions, Editors: Greve J., Puppels G. J., Otto C., 1999, p. 215-218.

20.

Barvík Jr. I., Štěpánek J., Bok J.: Molecular dynamics simulations of nucleic acids: A) molecular dynamics simulations of the oligonucleotide with the modified phosphate/phosphonate internucleotide LINKAGE. General Physiology and Biophysics, 1998, p. 21-23 (Přednáška - Barvík Jr. I.).

Monografie

1.

Procházka M., Štěpánek J.: Surface-enhanced Raman Scattering (SERS) and its Application to Biomolecular and Cellular Investigation. Applications of Raman Spectroscopy to Biology - From Basic Studies to Disease Diagnosis , Amsterdam, Editors: M. Ghomi, ISBN: 978-1-60750-999-8, Publishers: IOS Press, 2012, p. 1-30.

2.

Štěpánek J., Vaisocherová H., Piliarik M.: Molecular Interactions in SPR Sensors. Surface Plasmon Resonance Based Sensors, Berlin, Editors: Springer, ISBN: 103-540-33918-3, 2006, p. 69-94.

3.

Štěpánek J., Němeček D., Bok J., Hanuš J., Ruszová K.: Triplex-like complexes formed in mixed solutions of adenosine and polyuridylic acid: Raman study. Ricordo di Alessandro Bertoluzza, Bologna, Editors: CLUEB, ISBN: 88-491-2112-1, 2003, p. 341-354.