Articles

1.

Tragl A., Ptáková A., Sinica V., Meerupally R., Konig C., Rosa C., Barvík Jr. I., Vlachová V., Zimmermann K.: A Fluorescent Protein C-terminal Fusion Knock-In is functional with TRPA1 but not TRPC5. BBA - Molecular Cell Research, 2025.

2.

Blumenstein J., Dostálová H., Rucká L., Štěpánek V., Busche T., Kalinowski J., Pátek M., Barvík Jr. I.: Promoter Recognition Specificity of Corynebacterium glutamicum Stress Response Sigma Factors sD and sH Deciphered Using Computer Modeling and Point Mutagenesis. Journal of Computer-Aided Molecular Design, 2025, vol. 39, p. 1.

3.

Ptáková A., Zímová L., Barvík Jr. I., Bon R.S., Vlachová V.: Functional determinants of lysophospholipid- and voltage-dependent regulation of TRPC5 channel. Cellular and Molecular Life Sciences, 2024.

4.

Vlachová V., Barvík Jr. I., Zímová L.: Human Transient Receptor Potential Ankyrin 1 Channel: Structure, Function, and Physiology. Subcellular Biochemistry , 2024, vol. 104, p. 207-244.

5.

Profantová (roz. Řezáčová) B., Římal V., Profant V., Socha O., Barvík Jr. I., Štěpánková H., Štěpánek J.: Polymorphic potential of SRF binding site of c-Fos Gene Promoter: In vitro study. RSC Advances, 2024, vol. 14, p. 38253-38267.

6.

Lebedinskiy K., Barvík Jr. I., Tošner Z., Císařová I., Jindřich J., Hrdina R.: Spatial arrangements of cyclodextrin host–guest complexes in solution studied by 13C NMR and molecular modelling. Journal of Organic Chemistry, 2024.

7.

Simko P., Leskanicova A., Suvakova M., Koval J., Zidekova N., Karasova M., Majerova P., Verboova L., Blicharova A., Kertys M., Barvík Jr. I., Kovac A., Kiskova T.: The First In Vivo Study Shows That Gyrophoric Acid Changes Behavior of Healthy Laboratory Rats. International Journal of Molecular Sciences, 2024, vol. 25, p. 6782.

8.

Busche T., Dostálová H., Rucká L., Holátko J., Barvík Jr. I., Štěpánek V., Pátek M., Kalinowski J.: Overlapping SigH and SigE Sigma Factor Regulons in Corynebacterium glutamicum. Front. Microbiol. - Microbial Physiology and Metabolism, 2023, vol. 13, p. 1059649 (20.

9.

Simko P., Leskanicova A., Suvakova M., Blicharova A., Karasova M., Goga M., Kolesarova M., Bojkova B., Majerova P., Zidekova N., Barvík Jr. I., Kovac A., Kiskova T.: Biochemical properties of atranorin induced behavioral and systematic changes of laboratory rats. Life, 2022, vol. 12, p. 1090 (19.

10.

Debiais M., Molina A., Muller S., Vasseur J.J., Barvík Jr. I., Baraquey C., Smietana M.: Design and NMR characterization of reversible Head-to-Tail boronate-linked macrocyclic nucleic acids. Organic & Biomolecular Chemistry, 2022, vol. 20, p. 2889-2895.

11.

Jansa P., Barvík Jr. I., Hulcová D., Matoušová E.: Synthesis and Cholinesterase Inhibitory Activity Study of Amaryllidaceae Alkaloid Analogues with N-Methyl Substitution. Organic & Biomolecular Chemistry, 2022, vol. 20, p. 3960-3966.

12.

Bujak L., Holanová K., Marín A.G., Henrichs V., Barvík Jr. I., Braun M., Lánský Z., Piliarik M.: Fast Leaps Between Millisecond Confinements Govern Ase1 Diffusion Along Microtubules . Small Methods, 2021, vol. 5, p. 2100370.

13.

Sinica V., Zímová L., Barvikova K., Macikova L., Barvík Jr. I., Vlachová V.: Human and mouse TRPA1 are heat and cold sensors differentially tuned by voltage. Cells, 2020, vol. 9, p. 57.

14.

Boušová K., Barvík Jr. I., Heřman P., Hofbauerová K., Monincová L., Majer P., Zouharová M., Vetýšková V., Poštulková K., Vondrášek J.: Mapping of CaM, S100A1 and PIP2 binding epitopes in the intracellular N- and C-termini of TRPM4. International Journal of Molecular Sciences, 2020, vol. 21, p. 4323.

15.

Kouba T., Koval T., Sudzinová P., Pospíšil J., Brezovská B., Hnilicová J., Šanderová H., Janoušková M., Šiková M., Halada P., Sýkora M., Barvík Jr. I., Nováček J., Trundová M., Dušková J., Skálová T., Chon U., Murakami K., Dohnálek J., Krásný L.: Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase. Nature Communications, 2020, vol. 11, p. 6419.

16.

Barvikova K., Barvík Jr. I., Sinica V., Zímová L., Vlachová V.: Phospho-Mimetic Mutation at Ser602 Inactivates Human TRPA1 Channel. International Journal of Molecular Sciences, 2020, vol. 21, p. 7995.

17.

Zímová L., Barvikova K., Macikova L., Vyklická L., Sinica V., Barvík Jr. I., Vlachová V.: Proximal C-terminus Serves as a Signaling Hub for TRPA1 Channel Regulation via Its Interacting Molecules and Supramolecular Complexes. Frontiers in Physiology, 2020, vol. 11, p. 189.

18.

Soukup T., Hloch K., Doseděl M., Tebbens J., Nekvindová J., Šembera Š., Veleta T., Pávek P., Barvík Jr. I.: The Influence of Coffee Intake and Genetics on Adenosine Pathway in Rheumatoid Arthritis". Pharmacogenomics, 2020, vol. 21, p. 735-749.

19.

Šiková M., Wiedermannová J., Převorovský M., Barvík Jr. I., Sudzinová P., Kofroňová O., Benada O., Šanderová H., Condon C., Krásný L.: The Torpedo Effect in Bacillus subtilis: RNase J1 Resolves Stalled Transcription Complexes. The EMBO Journal, 2020, vol. 39, p. 102500.

20.

Macikova L., Vyklická L., Barvík Jr. I., Sobolevsky A., Vlachová V.: Cytoplasmic intersubunit interface controls use-dependence of thermal activation of TRPV3 channel. International Journal of Molecular Sciences, 2019, vol. 20, p. 3990.

21.

Smutný T., Barvík Jr. I., Veleta T., Pávek P., Soukup T.: Genetic predispositions of glucocorticoid resistance and therapeutic outcomes in polymyalgia rheumatica and giant cell arteritis. Journal of Clinical Medicine, 2019, vol. 8, p. 582.

22.

Pátek M., Dostálová H., Busche T., Holátko J., Rucká L., Štěpánek V., Barvík Jr. I., Nešvera J., Kalinowski J.: Overlap of promoter recognition specificity of stress response sigma factors SigD and SigH in Corynebacterium glutamicum ATCC 13032. Frontiers in Microbiology, 2019, vol. 9, p. 3287.

23.

Kouba T., Pospíšil J., Hnilicová J., Šanderová H., Barvík Jr. I., Krásný L.: The Core and Holoenzyme forms of RNA Polymerase from Mycobacterium smegmatis. Journal of Bacteriology, 2019, vol. 201, p. 00583-18.

24.

Soukup T., Barvík Jr. I., Nekvindová J., Kuběna A., Tebbens J., Pávek P., Doseděl M.: Are haplotypes in a single MTX pathway more predictive for response in rheumatoid arthritis than in different pathways?. Pharmacogenomics, 2018, vol. 19, p. 379-381.

25.

Vvedenskaya I.O., Bird J.G., Zhang Y., Jiao X., Barvík Jr. I., Krásný L., Kiledjian M., Taylor D., Ebright R.H., Nickels B.E.: CapZyme-Seq" comprehensively defines promoter-sequence determinants for RNA 5' capping with NAD+. Molecular Cell, 2018, vol. 70, p. 553-564.

26.

Zímová L., Sinica V., Kadková A., Vyklická L., Zíma V., Barvík Jr. I., Vlachová V.: Intracellular cavity of sensor domain controls allosteric gating of TRPA1 channel. Science Signaling, 2018, vol. 11, p. 8621 (13.

27.

Gimenez Molina A., Barvík Jr. I., Muller S., Vasseur J.J., Smietana M.: RNA-based boronate internucleosidic linkages: an entry into reversible templated ligation and loop formation. Organic & Biomolecular Chemistry, 2018, vol. 16, p. 8824-8830.

28.

Barvík Jr. I., Rejman D., Šanderová H., Panova N., Krásný L.: Non-canonical Transcription Initiation: The Expanding Universe of Transcription Initiating Substrates. FEMS Microbiology Reviews, 2017.

29.

Reverte M., Barvík Jr. I., Vasseur J.J., Smietana M.: RNA-directed off/on switch of RNase H activity using boronic ester formation. Organic & Biomolecular Chemistry, 2017, vol. 15, p. 8204-8210.

30.

Zachrdla M., Padrta P., Rabatinová A., Šanderová H., Barvík Jr. I., Krásný L., Žídek L.: Solution Structure of Domain 1.1 of the Sigma A Factor from Bacillus subtilis is Preformed for Binding to the RNA Polymerase Core. Journal of Biological Chemistry, 2017.

31.

Maršáková L., Barvík Jr. I., Zíma V., Zímová L., Vlachová V.: The first extracellular linker is important for several aspects of the gating mechanism of human TRPA1 channel. Frontiers in Molecular Neuroscience, 2017.

32.

Soukup T., Doseděl M., Nekvindová J., Kuběna A., Vlcek J., Bradna P., Barvík Jr. I., Tkachenko I., Tebbens J., Pávek P.: The plausible association of MTHFR and adenosine A2a receptor polymorphisms with nodules in rheumatoid arthritis patients treated with methotrexate. Pharmacogenetics and Genomics, 2017, vol. 27, p. 43-50.

33.

Páv O., Barvík Jr. I., Liboska R., Petrová-Endová M., Šimák O., Rosenbergová Š., Novák P., Buděšínský M., Rosenberg I.: Tuning the hybridization properties of modified oligonucleotides: from flexible to conformationally constrained phosphonate internucleotide linkages. Organic & Biomolecular Chemistry , 2017, vol. 15, p. 701-707.

34.

Raindlová V., Janoušková M., Slavíčková M., Perlíková P., Boháčová S., Milisavljevic N., Šanderová H., Benda M., Barvík Jr. I., Krásný L., Hocek M.: Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases. Nucleic Acids Research, 2016, vol. 44, p. 3000-3012.

35.

Bird J.G., Zhang Y., Tian Y., Panova N., Barvík Jr. I., Greene L., Liu M., Buckley B., Krásný L., Lee J.K., Kaplan C.D., Ebright R.H., Nickels B.E.: The mechanism of RNA 5' capping with NAD+, NADH, and desphospho-CoA. Nature, 2016, vol. 535, p. 444-447.

36.

Panova N., Zborníková E., Šimák O., Pohl R., Kolář M., Bogdanová K., Večeřová R., Seydlová G., Fišer R., Hadravová R., Šanderová H., Vítovská D., Šiková M., Látal T., Lobko Y., Barvík Jr. I., Krásný L., Rejman D.: Insights into the Mechanism of Action of Bactericidal Lipophosphonoxins. PLOS ONE, 2015, vol. 10, p. 0145918 (28.

37.

Zíma V., Witschas K., Hynková A., Zímová L., Barvík Jr. I., Vlachová V.: Structural modeling and patch-clamp analysis of pain-related mutation TRPA1-N855S reveal inter-subunit salt bridges stabilizing the channel open state. Neuropharmacology, 2015, vol. 93, p. 294-307.

38.

Ovadia R., Lebrun A., Barvík Jr. I., Vasseur J.J., Baraquey C., Alvarez K.: Synthesis and structural characterization of monomeric and dimeric Peptide Nucleic Acid prepared by microwave-promoted multicomponent reaction. Organic & Biomolecular Chemistry, 2015, vol. 13, p. 11052-11071.

39.

Soukup T., Doseděl M., Pávek P., Barvík Jr. I., Nekvindová J., Bubancová I., Bradna P., Kuběna A., Fernandez A.C., Veleta T.: The impact of C677T and A1298C MTHFR polymorphisms on Methotrexate therapeutic response in East Bohemian region Rheumatoid Arthritis patients. Rheumatology International, 2015, vol. 35, p. 1149-1161.

40.

Šípová H., Špringer T., Rejman D., Šimák O., Petrová-Endová M., Novák P., Králíková Š., Páv O., Liboska R., Barvík Jr. I., Štěpánek J., Rosenberg I., Homola J.: 5'-O-Methylphosphonate nucleic acids - new modified DNAs that increase the E. coli RNase H cleavage rate of hybrid duplexes. Nucleic Acids Research, 2014, vol. 42, p. 5378-5389.

41.

Maláč K., Barvík Jr. I.: Recognition of 2',5'-linked oligoadenylates by human ribonuclease L: molecular dynamics study. Journal of Molecular Modeling, 2014, vol. 20, p. 2123-1-2123-19.

42.

Maláč K., Barvík Jr. I.: Complex between Human RNase HI and the phosphonate-DNA/RNA duplex: Molecular Dynamics Study. Journal of Molecular Graphics and Modelling, 2013, vol. 44, p. 81-90.

43.

Maláč K., Barvík Jr. I.: Substrate recognition by norovirus polymerase: microsecond molecular dynamics study. Journal of Computer-Aided Molecular Design, 2013, vol. 27, p. 373-388.

44.

Rabatinová A., Šanderová H., Jirát Matějčková J., Korelusová J., Sojka L., Barvík Jr. I., Papoušková V., Sklenář V., Žídek L., Krásný L.: The δ Subunit of RNA Polymerase Is Required for Rapid Changes in Gene Expression and Competitive Fitness of the Cell. Journal of Bacteriology, 2013, vol. 195, p. 2603-2611.

45.

Surá L., Zíma V., Maršáková L., Hynková A., Barvík Jr. I., Vlachová V.: C-terminal acidic cluster is involved in Ca2+-induced regulation of human transient receptor potential ankyrin 1 channel. Journal of Biological Chemistry, 2012, vol. 287, p. 18067-18077.

46.

Liboska R., Snášel J., Barvík Jr. I., Buděšínský M., Pohl R., Točík Z., Páv O., Rejman D., Novák P., Rosenberg I.: 4'-Alkoxy oligodeoxynucleotides: a novel class of RNA mimics. Organic & Biomolecular Chemistry, 2011, vol. 9, p. 8261-8267.

47.

Martin A.R., Barvík Jr. I., Luvino D., Smietana M., Vasseur J.J.: DNA-Templated Self-Assembly by Dynamic and Programmable Boronic Ester Formation. Angewandte Chemie, 2011, vol. 50, p. 4193-4196.

48.

Barvík Jr. I.: Počítačové modelování biomolekul. Československý časopis pro fyziku, 2011, vol. 61, p. 163-170.

49.

Sojka L., Kouba T., Barvík Jr. I., Šanderová H., Maderová Z., Jonák J., Krásný L.: Rapid changes in gene expression: DNA determinants of promoter regulation by the concentration of the transcription initiating NTP in Bacillus subtilis. Nucleic Acids Research, 2011, vol. 39, p. 4598-4611.

50.

Králíková Š., Buděšínský M., Barvík Jr. I., Masojídková M., Točík Z., Rosenberg I.: Synthesis and properties of ApA analogues with shortened phosphonate internucleotide linkage. Nucleosides, Nucleotides and Nucleic Acids, 2011, vol. 30, p. 524-543.

51.

Páv O., Košiová I., Barvík Jr. I., Pohl R., Buděšínský M., Rosenberg I.: Synthesis of oligoribonucleotides with phosphonate-modified linkages. Organic & Biomolecular Chemistry, 2011, vol. 9, p. 6120-6126.

52.

Priet S., Zlatev I., Barvík Jr. I., Geerts K., Leyssen P., Neyts J., Dutartre H., Canard B., Vasseur J.J., Morvan F., Alvarez K.: 3'-Deoxy phosphoramidate dinucleosides as improved inhibitors of hepatitis C virus subgenomic replicon and NS5B polymerase activity. Journal of Medicinal Chemistry, 2010, vol. 53, p. 6608-6617.

53.

Šanderová H., Tišerová H., Barvík Jr. I., Sojka L., Jonák J., Krásný L.: The N-terminal region is crucial for the thermostability of the G-domain of Bacillus stearothermophilus EF-Tu. Biochimica Biophysica Acta, 2010, vol. 1804, p. 147-155.

54.

Točík Z., Buděšínský M., Barvík Jr. I., Rosenberg I.: Conformational evaluation of labeled C3'-O-P-(13)CH(2)-O-C4'' phosphonate internucleotide linkage, a phosphodiester isostere. Biopolymers, 2009, vol. 91, p. 514-529.

55.

Zlatev I., Dutartre H., Barvík Jr. I., Neyts J., Canard B., Vasseur J.J., Alvarez K., Morvan F.: Phosphoramidate dinucleosides as hepatitis C virus polymerase inhibitors. Journal of Medicinal Chemistry, 2008, vol. 51, p. 5745-5757.

56.

Páv O., Barvík Jr. I., Buděšínský M., Masojídková M., Rosenberg I.: Ring enlargement of cyclic acetals and ketals: a way to seven-membered nucleoside phostones. Organic Letters, 2007, vol. 9, p. 5469-5472.

57.

Rejman D., Kočalka P., Buděšínský M., Barvík Jr. I., Rosenberg I.: Stereospecific N-oxide-mediated monoprotection of trans-3,4-dihydroxypyrrolidine derivatives. Tetrahedron: Asymmetry, 2007, vol. 18, p. 2165-2174.

58.

Heřman P., Barvík Jr. I., Staiano M., Vitale A., Večeř J., Rossi M., D'Auria S.: Temperature modulates binding specificity and affinity of the D-trehalose/D-maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis. Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 2007, vol. 1774, p. 540-544.

59.

Sojka L., Fučík V., Krásný L., Barvík Jr. I., Jonák J.: YbxF, a protein associated with exponential-phase ribosomes in Bacillus subtilis. Journal of Bacteriology, 2007, vol. 189, p. 4809-4814.

60.

Deglane G., Abes S., Molnár P., Michel T., Prevot P., Vives E., Debart F., Barvík Jr. I., Lebleu B., Vasseur J.J.: Impact of the guanidinium group on hybridization and cellular uptake of cationic oligonucleotides. ChemBioChem, 2006, vol. 7, p. 684-692.

61.

Točík Z., Barvík Jr. I., Buděšínský M., Rosenberg I.: Novel lsosteric, isopolar phosphonate analogs of oligonucleotides: Preparation and properties. Biopolymers, 2006, vol. 83, p. 400-413.

62.

Barvík Jr. I.: E. coli RNase HI and the Phosphonate-DNA/RNA Hybrid: Molecular Dynamics Simulations. Nucleosides, Nucleotides & Nucleic Acids, 2005, vol. 24, p. 435-441.

63.

Heřman P., Večeř J., Barvík Jr. I., Scognamiglio V., Staiano M., de Champdoré M., Varraile A., Rossi M., D'Auria S.: The role of calcium in the conformational dynamics and thermal stability of the D-galactose/D-glucose-binding protein from Escherichia coli. Proteins: Structure, Function, and Bioinformatics, 2005, vol. 61, p. 184-195.

64.

Soukup T., Bradna P., Barvík Jr. I., Hrnčíř Z.: Autoantibodies against thyreoperoxidase and thyrotropin in systemic lupus erythematosus (Monocentric study from the population of east bohemian region). Rheumatologia, 2004, vol. 18, p. 167-172.

65.

Barvík Jr. I., Štěpánek J., Bok J.: Explicit Solvent Molecular Dynamics Simulation of Duplex Formed by the Modified Oligonucleotide with Alternating Phosphate/Phosphonate Internucleoside Linkages and its Natural Counterpart. Journal of Biomolecular Structure & Dynamics, 2002, vol. 19, p. 863-876.

66.

Barvík Jr. I., Štěpánek J., Bok J.: Fully solvated molecular dynamics simulations of duplexes formed by modified oligonucleotides with xylo/phosphodiesteric and xylo/phosphonate internucleoside linkages and their natural counterpart. Computer Physics Communications, 2002, vol. 147, p. 158-161.

67.

Hanuš J., Barvík Jr. I., Ruszová-Chmelová K., Štěpánek J., Turpin P.Y., Rosenberg I., Petrová-Endová M.: –CH2– lengthening of the internucleotide linkage in the ApA dimer can improve its conformational compatibility with its natural polynucleotide counterpart. Nucleic Acids Research, 2001, vol. 29, p. 5182-5194.

68.

Barvík Jr. I., Štěpánek J., Bok J.: Molecular dynamics simulations of the oligonucleotide with the modified phosphate/phosphonate internucleotide linkage. Czechoslovak Journal of Physics, 1998, vol. 48, p. 409-415.

Conference proceedings

1.

Hofbauerová K., Kopecký Jr. V., Barvík Jr. I., Klener J., Teisinger J.: Study of new binding sites for calmodulin on transient receptor potential channels of melastatin TRPM5, TRPM6, and TRPM7 N-termini. 26th International Conference on Raman Spectroscopy (ICORS 2018), Jeju, Korea, August 26–31, 2018, Editors: D. Kim & Y. M. Jung , 2018, p. 1153-1154 (Poster - Hofbauerová K.).

2.

Vyklická L., Barvík Jr. I., Zíma V., Zímová L., Vlachová V.: In-silico opening of TRPA1 channel points to first extracellular linker as an open-state stabilizer. EBSA Edinburgh 2017, 2017.

3.

Zíma V., Barvík Jr. I.: Mechanism for PIP2 activation of TRP channels. 9. International Conference on Structural Biology, Curych, Švýcarsko, 18-20. 9. 2017, 2017 (Poster - Barvík Jr. I.).

4.

Vlachová V., Zímová L., Sinica V., Vyklická L., Kadková A., Zíma V., Barvík Jr. I.: Polymodal regulation of TRPA1 by calcium. European Symposium on Hormones and Cell Regulation, Mont Ste Odile, France, 04-07.10.2017, 2017 (Invited lecture - Vlachová V.).

5.

Synytsya V., Zímová L., Kadková A., Vyklická L., Zíma V., Barvík Jr. I., Vlachová V.: The sensor domain of TRPA1 channel regulates gating through a putative phosphoinositide-binding site. EBSA Edinburg 2017, 2017 (Poster - Synytsya V.).

6.

Zímová L., Synytsya V., Witschas K., Hynková A., Zíma V., Barvík Jr. I., Vlachová V.: The S4-S5 linker of Transient Receptor Potential Ankyrin 1 as a Precise Stimuli Integrator. 10th European Biophysics Congress, Dreden, Germany, July 18-22, 2015 (Poster - Zímová L.).

7.

Hynková A., Zíma V., Witschas K., Surá L., Barvík Jr. I., Vlachová V.: Inter­subunit salt bridges between adjacent S4­-S5 linkers of TRPA1 channel stabilize the channel open state. Ion Channels 2014, Mount Holyoke, USA, July 6-11, 2014 (Poster - Hynková A.).

8.

Hynková A., Witschas K., Zíma V., Surá L., Barvík Jr. I., Vlachová V.: Identification of functional microdomains within the S4­-S5 linker of human TRPA1 channel. Neuroscience 2013, San Diego, USA, November 9-13, 2013 (Poster - Hynková A.).

9.

Zíma V., Surá L., Witschas K., Maršáková L., Hynková A., Barvík Jr. I., Vlachová V.: On the track of TRPA1 gating mechanisms. ISMB/ECCB 2013, Berlin, Germany, July 21-23, 2013 (Poster - Zíma V.).

10.

Witschas K., Surá L., Zíma V., Hynková A., Barvík Jr. I., Vlachová V.: S4-S5 linker is involved in voltage-dependent gating of human transient receptor potential ankyrin 1 channel. Biophysical Society 2013 Annual Meeting, Philadelphia, USA, February 2-6, 2013.

11.

Zíma V., Barvík Jr. I.: Molecular dynamics simulations shed light on the TRPA1 structure. 11th European Conference on Computational Biology, Basel, Switzerland, September 9-12, 2012 (Poster - Zíma V.).

12.

Zíma V., Surá L., Barvík Jr. I., Vlachová V.: Clues to understanding the voltage regulation of TRPA1. 8th EBSA European Biophysics Congress, Budapest, Hungary, August 23-27, 2011, p. S174 (Poster - Zíma V.).

13.

Zíma V., Barvík Jr. I.: The homology modeling and molecular dynamics simulations of the ion channels from TRP family. XV School of pure and applied biophysics, Venice, Italy, January 24-28, 2011 (Poster - Zíma V.).

14.

Espinoza Herrera S.J., Barvík Jr. I., Štěpánek J.: Spectroscopic Study of Magnesium Effect on Stability of RNA and DNA Triple Strand Polynucleotide. XXII International Conference on Raman Spectroscopy, AIP Conference Proceedings, vol. 1267, 2010, p. 613-614.

15.

Zíma V., Barvík Jr. I.: The homology modeling and molecular dynamics simulations of the ion channels from TRP family. 8th Annual Ion Channel Retreat, Vancouver BC, Canada, June 28-30, 2010 (Poster - Zíma V.).

16.

Točík Z., Buděšínský M., Barvík Jr. I., Rosenberg I.: On the Stereochemistry of C3'-O-P-CH2-O-C4'' Phosphonate Internucleotide Bond, a Phosphate Isostere. Nucleic Acids Symposium Series, vol. 52, no. 1, 2008, p. 427-428.

17.

Barvík Jr. I.: Cationic Phosphoramidate α-oligonucleotides Target Double Stranded DNA: Molecular Dynamics Study. Journal of Biomolecular Structure & Dynamics, 2005, p. 774-775.

18.

Deglane G., Abes S., Michel T., Laurent A., Naval M., Martinand-Mari C., Prevot P., Vives E., Robbins I., Barvík Jr. I., Lebleu B., Debart F., Vasseur J.J.: Combining a cationic phosphoramidate backbone and alpha-anomeric nucleosides provides oligonucleotides with improved hybridization and cell uptake properties. Chemistry of Nucleic Acid Components (Collection symposium series), 2005, p. 143-147 (Lecture - Vasseur J.J.).

19.

Točík Z., Barvík Jr. I., Buděšínský M., Rosenberg I.: Isosteric phosphonate 3'-O-P-CH2-O-4'C internucleotide linkage: Attempts to get more data on its stereochemistry. Chemistry of Nucleic Acid Components - Collection Symposium Series, vol. 7, Editors: M. Hocek, 2005, p. 481-482.

20.

Rosenberg I., Barvík Jr. I., Buděšínský M., Kočalka P., Králíková Š., Liboska R., Pačes O., Páv O., Petrová-Endová M., Pohl R., Pressová M., Rejman D., Votruba I., Točík Z.: Nucleoside phosphonic acids and related oligonucleotides: Structural diversity vs biological properties. Chemistry of Nucleic Acid Components - Collection Symposium Series, vol. 7, Editors: M. Hocek, 2005, p. 153-157.

21.

Točík Z., Liboska R., Barvík Jr. I., Buděšínský M., Masojídková M., Kavenová I., Rosenberg I.: Isosteric Phosphonate Mono- and Oligonucleotides Originating from 4´,5´-Didehydronucleoside Precursors: Some Synthetic Possibilities and Limitations. Chemistry of Nucleic Acid Components - Collection Symposium Series, vol. 5, Editors: Z. Tocik, M. Hocek, 2002, p. 208-214.

22.

Barvík Jr. I., Štěpánek J., Bok J.: Fully Solvated Molecular Dynamics Simulations of a Duplex Formed by a Modified Oligonucleotide with the Isosteric Phosphonate Internucleoside Linkages and Its Natural Counterpart. Journal of Molecular Graphics and Modelling, 2000, p. 194.

23.

Barvík Jr. I., Štěpánek J., Bok J.: Molecular dynamics simulations of the oligonucleotide with the modified phosphate/phosphonate internucleotide linkage. Computer Physics Communications, 1999, p. 122.

24.

Štěpánek J., Hanuš J., Chmelová K., Turpin P.Y., Barvík Jr. I.: Optical spectroscopy study of nucleic acid interactions with newly synthesized complementary short-chain nucleic acids. Spectroscopy of Biological Molecules: New Directions, Editors: Greve J., Puppels G. J., Otto C., 1999, p. 215-218.

25.

Barvík Jr. I., Štěpánek J., Bok J.: Molecular dynamics simulations of nucleic acids: A) molecular dynamics simulations of the oligonucleotide with the modified phosphate/phosphonate internucleotide LINKAGE. General Physiology and Biophysics, 1998, p. 21-23 (Lecture - Barvík Jr. I.).