Defended doctoral theses:

2021

• RNDr. Jakub Klener, Ph.D.: Study of nucleic-acid structure and interactions by resonance Raman scattering
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

2018

• Mgr. Tomáš Pazderka: Studium struktury proteinů pomocí optické spektroskopie
  Advisor: RNDr. Vladimír Kopecký Jr., PhD.

• Mgr. Vlastimil Zíma: Molecular dynamics simulations of complexes consisting of proteins and nucleic acids
  Advisor: RNDr. Ivan Barvík Jr., PhD.

2017

• RNDr. Václav Profant: Structure and dynamics of peptides and proteins in solution: application of Raman optical activity
  Advisor: Prof. RNDr. Vladimír Baumruk, DrSc.

• Mgr. Petra Šimáková: Surface-enhanced Raman microspectroscopy of biomolecules and biological systems
  Advisor: Prof. RNDr. Marek Procházka, Dr.

• Mgr. Vlastimil Peksa: Designing and testing of new metal nanosubstrates for biomolecular sensors based on surface-enhanced Raman scattering (SERS) spectroscopy
  Advisor: Prof. RNDr. Marek Procházka, Dr.

2015

• Mgr. Markéta Pazderková: Raman optical activity of biomolecules: from simple models to complex systems
  Advisor: Prof. RNDr. Vladimír Baumruk, DrSc.

• RNDr. Tomáš Špringer, Ph.D.: In situ study of nuclear acids interactions key for gene expression and therapy based on its silencing
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

2014

• Mgr. Barbora Profantová (roz. Řezáčová), Ph.D.: Molecular mechanism of DNA regulatory segment recognition by MADS box family transcription factors
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

2013

• RNDr. Martin Kříž, Ph.D.: Spectroscopic study of key biomolecular interactions for therapeutic applications of modified oligonucleotides
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

• Mgr. Kamil Maláč: Počítačové modelování biomolekul - potenciálních chemoterapeutik
  Advisor: RNDr. Ivan Barvík Jr., PhD.

2012

• Mgr. Natália Šmídová: Optimization of surface-enhanced Raman scattering spectroscopy for study of biologically important biomolecules and their interactions
  Advisor: Prof. RNDr. Marek Procházka, Dr.

2011

• Ing. Shirly Josefina Espinoza Herrera, PhD.: Function of Magnesium Ions in the Formation of Biologically-Active Nucleic Acids Structures
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

2006

• RNDr. Hana Lísalová (roz. Vaisocherová), Ph.D.: Monitoring of Biomolecular Interactions for Nucleic Acids Research
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

• Mgr. Josef Kapitán, Ph.D.: Teoretický a experimentální rozvoj Ramanovy optické aktivity jako metody studia biomolekul ve vodním prostředí
  Advisor: Prof. RNDr. Vladimír Baumruk, DrSc.

2005

• RNDr. Daniel Němeček, PhD.: A New Generation of Synthetic Oligonucleotide Analogs Usable in Antisense Strategy: Hybridization Properties and Stability of Complexes Formed with Their Natural DNA Counterparts
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

• RNDr. Zdeněk Tošner, Ph.D.: MR Investigations of Host– Guest Complexes and Their Dynamic Properties
  Advisor: Prof. RNDr. Josef Štěpánek, CSc.

2004

• RNDr. Vladimír Kopecký Jr., PhD.: Structural and Physico–Chemical Properties of Nucleotide and Other Bioactive Compounds in Interaction with Proteins
  Advisor: Doc. RNDr. Peter Mojzeš, CSc.